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Bacterial Leaf Spot of Pepper

Bacterial leaf spot, caused by Xanthomonas campestris pv. vesicatoria, is the most common and destructive disease for peppers in the eastern United States. It is a  gram-negative, rod-shaped bacterium that can survive in seeds and plant debris from one season to another (Frank et al. 2005). Different strains or races of the bacterium are cultivar-specific, causing disease symptoms in certain varieties due to stringent host specificity. Bacterial leaf spot can devastate a pepper crop by early defoliation of infected leaves and disfiguring fruit. In severe cases, plants may die as it is extremely difficult to find a cure once the disease takes hold. However, there are several options for growers to prevent it from occurring and spreading.


Disease symptoms can appear throughout the above-ground portion of the plant, which may include leaf spot, fruit spot and stem canker. However, early symptoms show up as water-soaked lesions on leaves ( Figure 1) that can quickly change from green to dark brown and enlarge into spots that are up to 1/4 inch in diameter with slightly raised margins. Over time, these spots can dry up in less humid weather, which allows the damaged tissues to fall off, resulting in a tattered appearance on the affected leaves ( Figure 2).

The size of the lesions can be quite variable with irregular and somewhat angular margins. On some cultivars, leaves may display several small lesions – 1/4 to 1/2 centimeter – covering over 80% of the leaf’s area, whereas on others, fewer large lesions – larger than 1/2 centimeter – may be visible. In some cases, a combination of small and large lesions may be found on the leaves. Yield can be drastically reduced as affected leaves turn yellow and drop off prematurely, thus reducing plant productivity and exposing fruit to potential sunscald. In addition, raised, scab-like spots on fruit render the fruit unmarketable. Although a bacterial infection does not cause direct rot of fruit, lesions can provide an entrance for other fruit-rotting pathogens, resulting in fruit decay.

Disease Cycle & Epidemiology

Bacterial spot develops most rapidly during periods of warm temperatures and prolonged wet conditions. The pathogen survives in and on seeds and in plant debris (McGrath & Boucher, 2012). Although persistence of debris and the pathogen depend on environmental conditions, it is very common for the pathogen to survive in debris for at least a year. However, once infected debris gets decomposed and the organism is exposed to soil, it cannot stay alive for more than a few weeks. Infected weeds and volunteer host plants also can be sources of inoculum.

Disease development is favored by relative humidity above 85%, extended periods of leaf wetness and heat waves, especially when night temperatures remain above 70°F. Short periods (three days or more) below 40% relative humidity will reduce disease severity and delay development. Extended periods (at least three weeks) of low humidity irreversibly halts disease spread and development, even if favorable conditions return later.

In colder climates, bacterial leaf spot infection is mostly caused by contaminated seeds (Agrios, 2005). Even infected dried seeds that have been stored in cold for 10 years can produce plants with bacterial spot symptoms. Therefore, seeds constitute an important avenue for survival and spread of the pathogen. Bacteria can move within fields by wind-driven rain, irrigation droplets, aerosols and the handling of wet plants. The longer the plants are wet, the higher the chance of infection.

Disease Management

Any disease management strategy should be focused on breaking up the disease cycle. This can be achieved by using the following formula: DM=S2IR. This formula states that:

disease management is achieved by stopping or reducing survival of the pathogen, spread of the pathogen, infection of plants and reproduction of the pathogen.

For bacterial leaf spot, the following methods can be used to reduce the survival, spread and reproduction of bacteria and to minimize the infection of plants: using resistant varieties, seed treatment, foliage treatment and using an integrated strategy.

Using resistant varieties

  • As there are up to 11 different known strains of the pathogen, resistant varieties need to be resistant against all prevalent strains in an area. Sweet pepper varieties with resistance against all or multiple strains are available. A few of them are F1 of Autry, Green Flash, Labelle, Ninja, Outsider, Playmaker, Prowler, Raven, Samurai, SB3255 PB and Tracer. Additionally, Green Machine, Antebellum with X10R and 4288a with bs5+bs6 genes (intermediate resistance) can be used. A full list can be found at:
  • The most effective management strategy is the use of pathogen-free certified seeds and disease-free transplants to prevent introduction of the pathogen into greenhouses and field production areas. It is prudent to grow own transplants under sanitary conditions to avo id importing bacterial leaf spot on seedlings purchased from off-farm sources. Inspect plants very carefully and reject infected transplants, including your own. Buy seeds from a reputable company or treat your own seeds by following either of the methods described below.

Seed treatments

  • Washing seeds for 40 minutes in diluted Clorox (two parts Clorox plus eight parts water) is effective in reducing the bacterial population on a seed’s surface. However, bacteria inside the seeds are little affected by this treatment.
  • Seed treatment with hot water, soaking seeds for 30 minutes in water pre-heated to 125 F/51 C, is effective in reducing bacterial populations on the surface and inside the seeds. However, seed germination may be affected by heat treatment if not done accurately, while the risk is relatively low with bleach treatment.

Foliage treatment

  • Control of bacterial spot on greenhouse transplants is an essential step for preventing the spread of the leaf spot bacteria in the field. Transplants should be inspected regularly to identify symptomatic seedlings. Transplants with symptoms may be removed and destroyed or treated with streptomycin, if detected at the very early stage of disease development. It should be noted that strains of leaf spot bacteria resistant to streptomycin may arise with multiple applications of streptomycin.
  • Copper sprays can be used to control bacterial leaf spot, but they are not as effective when used alone on a continuous basis. Thus, combining these sprays with a plant resistance inducer, such as Regalia or Actigard, can provide good protection from the disease. Labeled rates of fixed copper is combined with different rates of Actigard, depending on the growth stage of plants. Higher rates (1 ounce per 100 gallons) of Actigard is used early in the season at transplant, 1/2 ounce is used two weeks later and 1/3 ounce is recommended for subsequent sprays as needed. Two other products, Penncozeb and Quintec were also found effective in some studies. However, organic growers should use copper and Regalia combination instead of copper and Actigard. Apply on a seven- to 10-day schedule; use the shorter interval when rain, high humidity and warm temperatures occur and the longer in case of dry weather.
  • Beneficial microorganisms containing products, such as Serenade and Sonata, can reduce pepper leaf spot if used proactively. However, once the disease has spread to more than 5% of plants, these products can’t suppress the disease.
  • Infested crop debris and infected weeds are additional sources of the pathogen and must be managed in an effective BLS control program. It is important to control nightshade, horsenettle, jimsonweed and all other solanaceous weeds from current and future pepper fields. Breakdown of crop residue can be hastened by disking or plowing field immediately after the final harvest.
  • Crop rotation should be used to avoid pathogen carryover on volunteers and crop residue. Avoid fields that have been planted with peppers or tomatoes, especially if they had bacterial spot. In the field, use at least a three-year rotation because the pathogen can survive in infested crop debris until it completely decomposes. Do not rotate pepper with tomato, eggplant or potato, and do not grow these crops together.
  • In the greenhouse, discard trays adjacent to outbreak location to minimize disease spread. Always start with new or disinfected greenhouse supplies and materials when planting peppers. Trays, benches, tools and greenhouse structures should be washed and sanitized between seedling crops.
  • Good cultural practices include avoiding all conditions that enable the pathogen to spread and multiply rapidly. Bacteria spread with splashing water. Therefore, overhead irrigation method should be replaced with drip irrigation and the field should not be accessed when plants are wet.

Integrated management

  • The best management of pepper bacterial leaf spot can be achieved through an integrated strategy because it’s been found that a single measure, such as seed treatment, did not adequately control bacterial spot (Stall et al., 2009). This integrated strategy includes all the methods mentioned above, in addition to scouting the field to time treatments, removing infected plants to reduce the spread of bacteria and timing mechanical and labor operations to occur at times when the risk of spreading leaf spot bacteria is low.

Authors: Mahfuz Rahman, WVU Extension Specialist – Plant Pathology, and Nur Alam Miah, WVU Extension Agriculture and Natural Resources Research Assistant

Last Reviewed: July 2020

Water-soaked lesions on pepper plant leaves that result from bacterial leaf spot.
Figure 1.  Water-soaked lesions on pepper plant leaves that result from bacterial leaf spot.

Tattered appearance on the affected pepper plant leaves due to bacterial leaf spot.
Figure 2.  Tattered appearance on the affected pepper plant leaves due to bacterial leaf spot.


Agrios, G. N. 2005. Plant Pathology (5th ed.). Boston: Elsevier Academic Press.

Boucher, T. J. 2012 (Reviewed). Vegetable Crops IPM Program Coordinator, University of Connecticut Cooperative Extension System, 24 Hyde Ave., Vernon, CT 06066.

Frank, T. 2005. Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence. J Bacteriol. 187(21): 7254–7266.

McGrath, M. T. and Boucher, J. 2012. Managing Bacterial Leaf Spot in Pepper. Vegetable MD Online.

Stall, R. E., Jones, J. B., and Minsavage G. V. 2009. Durability of Resistance in Tomato and Pepper to Xanthomonads Causing Bacterial Spot. Annu. Rev. Phytopathol. 2009. 47:265–84.

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